MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.3003496779500642
cnr4.145767963813645
efc0.59546996101936
fber95.78917694091797
fwhmavg3.9080833333333334
fwhmx3.78913
fwhmy4.06827
fwhmz3.86685
icvscsf0.1904469506555089
icvsgm0.4749147260524582
icvswm0.3346383232920329
inumed0.8567721843719482
inurange0.3194250464439392
qi10.0
qi20.0005330136519021189
rpvecsf25.711449640303577
rpvegm11.77002130351584
rpvewm18.680322221548845
sizex180
sizey256
sizez256
snrcsf2.38307896868315
snrgm10.640416721025712
snrtotal10.058387400791954
snrwm17.151666512667
snrdcsf13.718371624329741
snrdgm29.318006236628435
snrdtotal29.48549432776691
snrdwm45.42010512234256
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1.35698488820882
summarybgmad14.424042701721191
summarybgmean52.061981201171875
summarybgmedian50.60347366333008
summarybgn2789638.0
summarybgp0530.34277477264404
summarybgp9578.90956916809081
summarybgstdv15.268516540527344
summarycsfk0.060309513207471355
summarycsfmad138.7420654296875
summarycsfmean312.7716979980469
summarycsfmedian302.035400390625
summarycsfn15418.0
summarycsfp05128.53237686157226
summarycsfp95526.9536529541015
summarycsfstdv126.73755645751953
summarygmk0.3165577758136586
summarygmmad57.84664535522461
summarygmmean647.39892578125
summarygmmedian645.4902954101562
summarygmn50331.0
summarygmp05551.0151672363281
summarygmp95751.3914794921875
summarygmstdv60.66340255737305
summarywmk0.8033812174011796
summarywmmad48.63259506225586
summarywmmean993.0557250976562
summarywmmedian1000.0078735351562
summarywmn188259.0
summarywmp05877.8737670898437
summarywmp951075.886181640625
summarywmstdv58.30367660522461
tpmoverlapcsf0.21534916758537292
tpmoverlapgm0.5391786694526672
tpmoverlapwm0.5492941737174988
wm2max0.6443694825676778

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sume7bf6fe1ef65732947827796408a96a9
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.