MRIQC: individual T1w report

Summary

Subject ID: 009_ControlPre.
Date and time: 2018-05-07, 00:32.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.3003496779500642
cnr			4.145767963813645
efc			0.59546996101936
fber			95.78917694091797
fwhm	avg		3.9080833333333334
fwhm	x		3.78913
fwhm	y		4.06827
fwhm	z		3.86685
icvs	csf		0.1904469506555089
icvs	gm		0.4749147260524582
icvs	wm		0.3346383232920329
inu	med		0.8567721843719482
inu	range		0.3194250464439392
qi	1		0.0
qi	2		0.0005330136519021189
rpve	csf		25.711449640303577
rpve	gm		11.77002130351584
rpve	wm		18.680322221548845
size	x		180
size	y		256
size	z		256
snr	csf		2.38307896868315
snr	gm		10.640416721025712
snr	total		10.058387400791954
snr	wm		17.151666512667
snrd	csf		13.718371624329741
snrd	gm		29.318006236628435
snrd	total		29.48549432776691
snrd	wm		45.42010512234256
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	1.35698488820882
summary	bg	mad	14.424042701721191
summary	bg	mean	52.061981201171875
summary	bg	median	50.60347366333008
summary	bg	n	2789638.0
summary	bg	p05	30.34277477264404
summary	bg	p95	78.90956916809081
summary	bg	stdv	15.268516540527344
summary	csf	k	0.060309513207471355
summary	csf	mad	138.7420654296875
summary	csf	mean	312.7716979980469
summary	csf	median	302.035400390625
summary	csf	n	15418.0
summary	csf	p05	128.53237686157226
summary	csf	p95	526.9536529541015
summary	csf	stdv	126.73755645751953
summary	gm	k	0.3165577758136586
summary	gm	mad	57.84664535522461
summary	gm	mean	647.39892578125
summary	gm	median	645.4902954101562
summary	gm	n	50331.0
summary	gm	p05	551.0151672363281
summary	gm	p95	751.3914794921875
summary	gm	stdv	60.66340255737305
summary	wm	k	0.8033812174011796
summary	wm	mad	48.63259506225586
summary	wm	mean	993.0557250976562
summary	wm	median	1000.0078735351562
summary	wm	n	188259.0
summary	wm	p05	877.8737670898437
summary	wm	p95	1075.886181640625
summary	wm	stdv	58.30367660522461
tpm	overlap	csf	0.21534916758537292
tpm	overlap	gm	0.5391786694526672
tpm	overlap	wm	0.5492941737174988
wm2max			0.6443694825676778

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	e7bf6fe1ef65732947827796408a96a9
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.